Developing with Apache Beam notebooks

Using the Apache Beam interactive runner with JupyterLab notebooks lets you iteratively develop pipelines, inspect your pipeline graph, and parse individual PCollections in a read-eval-print-loop (REPL) workflow. These Apache Beam notebooks are made available through Vertex AI Workbench user-managed notebooks, a service that hosts notebook virtual machines pre-installed with the latest data science and machine learning frameworks.

This guide focuses on the functionality introduced by Apache Beam notebooks, but does not show how to build one. For more information on Apache Beam, see the Apache Beam programming guide.

Note: Apache Beam notebooks currently only support Python. Apache Beam pipeline segments running in these notebooks are run in a test environment, and not against a production Apache Beam runner; however, users can export pipelines created in an Apache Beam notebook and launch them on the Dataflow service. For more details, see Launch Dataflow jobs from a pipeline created in your notebook.

Before you begin

1. Sign in to your Google Cloud account. If you're new to Google Cloud, create an account to evaluate how our products perform in real-world scenarios. New customers also get $300 in free credits to run, test, and deploy workloads.

2. In the Google Cloud console, on the project selector page, select or create a Google Cloud project.

   Note: If you don't plan to keep the resources that you create in this procedure, create a project instead of selecting an existing project. After you finish these steps, you can delete the project, removing all resources associated with the project.

   Go to project selector

3. Make sure that billing is enabled for your Cloud project. Learn how to check if billing is enabled on a project.

4. Enable the Compute Engine, Notebooks APIs.

   Enable the APIs

5. In the Google Cloud console, on the project selector page, select or create a Google Cloud project.

   Note: If you don't plan to keep the resources that you create in this procedure, create a project instead of selecting an existing project. After you finish these steps, you can delete the project, removing all resources associated with the project.

   Go to project selector

6. Make sure that billing is enabled for your Cloud project. Learn how to check if billing is enabled on a project.

7. Enable the Compute Engine, Notebooks APIs.

   Enable the APIs

Note: Enable additional APIs for pipelines that use other services, such as Pub/Sub, before creating your Apache Beam notebook instance. If not specified, the notebook instance is executed by the default compute engine service account with the IAM project editor role. If the project explicitly limits the roles of the service account, make sure it still has enough authorization to run your notebooks. For example, reading from a Pub/Sub topic implicitly creates a subscription, and your service account needs an IAM Pub/Sub editor role. By contrast, reading from a Pub/Sub subscription only requires an IAM Pub/Sub subscriber role.

When you finish this guide, you can avoid continued billing by deleting the resources you created. For more details, see Cleaning up.

Launch an Apache Beam notebook instance

1. In the Google Cloud console, on the project selector page, select or create a Google Cloud project.
2. Navigate to Dataflow in the side panel and click workbench.
3. In the toolbar, click New Instance.
4. Select Apache Beam > Without GPUs.
5. (Optional) If you want to run notebooks on a GPU, you can select Apache Beam > With 1 NVIDIA Tesla T4.
6. On the New notebook instance page, select a network for the notebook VM and click Create.
7. (Optional) If you choose to create the notebook instance with a GPU, on the New notebook instance page, you have to check the Install NVIDIA GPU driver automatically for me option before clicking Create.
8. (Optional) If you want to set up a custom notebook instance, click Customize. For more information on customizing instance properties, see Create a user-managed notebooks instance with specific properties.
9. Click Open JupyterLab when the link becomes active. Vertex AI Workbench creates a new Apache Beam notebook instance.

Install dependencies (Optional)

Apache Beam notebooks already come with Apache Beam and Google Cloud connector dependencies installed. If your pipeline contains custom connectors or custom PTransforms that depend on third-party libraries, you can install them after you create a notebook instance. For more information, see Install dependencies in the user-managed notebooks documentation.

Get started with Apache Beam notebooks

After opening a user-managed notebooks instance, example notebooks are available in the Examples folder. The following are currently available:

• Word Count
• Streaming Word Count
• Streaming NYC Taxi Ride Data
• Dataflow Word Count
• Apache Beam SQL in notebooks
• Use GPUs with Apache Beam
• Visualize Data

Additional tutorials explaining the fundamentals of Apache Beam are available in the Tutorials folder. The following are currently available:

• Basic Operations
• Element Wise Operations
• Aggregations
• Windows
• IO Operations
• Streaming

These notebooks include explanatory text and commented code blocks to help you understand Apache Beam concepts and API usage. The Tutorials also provide hands-on exercises for you to practice concepts learned.

Note: Example code from the Streaming Word Count notebook is used in the following sections. There might be some minor discrepancies between the code snippets in this guide and what is found in the Streaming Word Count notebook.

Create a notebook instance

Navigate to File > New > Notebook and select a kernel that is Apache Beam 2.22 or later.

Note: Apache Beam notebooks are built against the master branch of the Apache Beam SDK. This means that the latest version of the kernel shown in the notebooks UI might be ahead of the most recently released version of the SDK.

Apache Beam is installed on your notebook instance, so include the interactive_runner and interactive_beam modules in your notebook.

import apache_beam as beam
from apache_beam.runners.interactive.interactive_runner import InteractiveRunner
import apache_beam.runners.interactive.interactive_beam as ib

If your notebook uses other Google APIs, add the following import statements:

from apache_beam.options import pipeline_options
from apache_beam.options.pipeline_options import GoogleCloudOptions
import google.auth

Set interactivity options

The following sets the amount of time the InteractiveRunner records data from an unbounded source. In this example, the duration is set to 10 minutes.

ib.options.recording_duration = '10m'

You can also change the recording size limit (in bytes) for an unbounded source through the recording_size_limit property.

# Set the recording size limit to 1 GB.
ib.options.recording_size_limit = 1e9

Note: When changing either the recording duration or size, call stop, clear, and record after changing values to allow new data to be recorded for the updated duration or size limit.

For additional interactive options, see the interactive_beam.options class.

Create your pipeline

Initialize the pipeline using an InteractiveRunner object.

options = pipeline_options.PipelineOptions()

# Set the pipeline mode to stream the data from Pub/Sub.
options.view_as(pipeline_options.StandardOptions).streaming = True

p = beam.Pipeline(InteractiveRunner(), options=options)

Read and visualize the data

The following example shows an Apache Beam pipeline that creates a subscription to the given Pub/Sub topic and reads from the subscription.

words = p
    | "read" >> beam.io.ReadFromPubSub(topic="projects/pubsub-public-data/topics/shakespeare-kinglear")

The pipeline counts the words by windows from the source. It creates fixed windowing with each window being 10 seconds in duration.

windowed_words = (words
   | "window" >> beam.WindowInto(beam.window.FixedWindows(10)))

After the data is windowed, the words are counted by window.

windowed_word_counts = (windowed_words
   | "count" >> beam.combiners.Count.PerElement())

The show() method visualizes the resulting PCollection in the notebook.

ib.show(windowed_word_counts, include_window_info=True)

You can scope the result set back from show() by setting two optional parameters: n and duration. Setting n limits the result set to show at most n number of elements, such as 20. If n is not set, the default behavior is to list the most recent elements captured until the source recording is over. Setting duration limits the result set to a specified number of seconds worth of data starting from the beginning of the source recording. If duration is not set, the default behavior is to list all elements until the recording is over.

If both optional parameters are set, show() stops whenever either threshold is met. In the following example, show() returns at most 20 elements that are computed based on the first 30 seconds worth of data from the recorded sources.

ib.show(windowed_word_counts, include_window_info=True, n=20, duration=30)

To display visualizations of your data, pass visualize_data=True into the show() method. You can apply multiple filters to your visualizations. The following visualization allows you to filter by label and axis:

Note: To ensure replayability while prototyping streaming pipelines, the show() method calls reuse the captured data by default. By setting interactive_beam.options.enable_capture_replay = False, you can change this behavior and have the show() method always fetch new data. Also, if you add a second unbounded source to your notebook, the data from the previous unbounded source is discarded.

Another useful visualization in Apache Beam notebooks is a Pandas DataFrame. The following example first converts the words to lowercase and then computes the frequency of each word.

windowed_lower_word_counts = (windowed_words
   | beam.Map(lambda word: word.lower())
   | "count" >> beam.combiners.Count.PerElement())

The collect() method provides the output in a Pandas DataFrame.

ib.collect(windowed_lower_word_counts, include_window_info=True)

Note: Editing and re-executing a cell is a common practice in notebook development. When you edit and re-execute a cell in a Apache Beam notebook, the cell does not undo the intended action of the code in the original cell. For example, if a cell adds a PTransform to a pipeline, re-executing that cell would add an additional PTransform to the pipeline. If you want to clear the state, restart the kernel and rerun the cells.

Visualize the data through the Interactive Beam inspector

You might find it distracting to introspect the data of a PCollection by constantly calling show() and collect(), especially when the output takes up a lof of the space on your screen and makes it hard to navigate through the notebook. You might also want to compare multiple PCollections side by side to validate if a transform works as intended, for example, when one PCollection goes through a transform and produces the other. For these use cases, the Interactive Beam inspector is a more convenient solution.

Interactive Beam inspector is provided as a JupyterLab extension apache-beam-jupyterlab-sidepanel that has been preinstalled in the Apache Beam notebook. With the extension, you can interactively inspect the state of pipelines and data associated with each PCollection without explicitly invoking show() or collect().

There are 3 ways to open the inspector:

• Click Interactive Beam on the top menu bar of JupyterLab. In the dropdown, locate Open Inspector and click it to open the inspector.

  

• Use the launcher page. If there is no launcher page opened, click File -> New Launcher to open it. On the launcher page, locate Interactive Beam and click Open Inspector to open the inspector.

  

• Use the command palette. Click View -> Activate Command Palette on the top menu bar of JupyterLab. In the popup, search Interactive Beam to list all options of the extension. Click Open Inspector to open the inspector.

  

When the inspector is about to open:

1. If there is exactly 1 notebook opened, the inspector automatically connects to it.

2. Otherwise, a dialog appears so that you can select a kernel (when no notebook is opened) or the notebook session (when multiple notebooks are opened) to connect to.

   

Note: It's recommended to open at least 1 notebook and select a kernel for it before opening the inspector. If you open an inspector with a kernel before opening any notebook, later when you open a notebook to connect to the inspector, you have to select the Interactive Beam Inspector Session from Use Kernel from Preferred Session. An inspector and a notebook are connected when they share the same session, not different sessions created from the same kernel. Selecting the same kernel from Start Preferred Kernel creates a new session that is independent from existing sessions of opened notebooks or inspectors.

You can open multiple inspectors for an opened notebook and arrange the inspectors by dragging and dropping their tabs freely in the workspace.

The inspector page automatically refreshes itself as you execute cells in the notebook. On the left side, it lists pipelines and PCollections defined in the connected notebook. PCollections are organized by the pipelines they belong to and can be collapsed by clicking the header pipeline.

For the items in the pipelines and PCollections list, on click, the inspector renders corresponding visualizations on the right side:

• If it's a PCollection, the inspector renders its data (dynamically if the data is still coming in for unbounded PCollections) with additional widgets to tune the visualization after clicking the APPLY button.

  

  Note: Because the inspector and the opened notebook share the same kernel session, they block each other from execution. For example, if the notebook is busy executing some code, the inspector does not update itself until the notebook completes that execution. Conversely, if you want to execute some code immediately in your notebook while the inspector is visualizing a PCollection dynamically, you have to click the STOP button to stop the visualization and preemptively release the kernel to the notebook.

• If it's a pipeline, the inspector displays the pipeline graph.

  

You might notice there are anonymous pipelines. Those are pipelines with PCollections that you can access, but they are no longer referenced by the main session. For example:

p = beam.Pipeline()
pcoll = p | beam.Create([1, 2, 3])

p = beam.Pipeline()

The above example creates an empty pipeline p and an anonymous pipeline that contains 1 PCollection pcoll. You can still access the anonymous pipeline through pcoll.pipeline.

The pipeline and PCollection list on the left can be toggled to save space for big visualizations.

Understand a pipeline's recording status

In addition to visualizations, you can also inspect the recording status for one or all pipelines in your notebook instance by calling describe.

# Return the recording status of a specific pipeline. Leave the parameter list empty to return
# the recording status of all pipelines.
ib.recordings.describe(p)

The describe() method provides the following details:

• Total size (in bytes) of all of the recordings for the pipeline on disk
• Start time of when the background recording job started (in seconds from Unix epoch)
• Current pipeline status of the background recording job
• Python variable for the pipeline

Launch Dataflow jobs from a pipeline created in your notebook

1. (Optional) Before using your notebook to run Dataflow jobs, restart the kernel, rerun all cells, and verify the output. If you skip this step, hidden states in the notebook might affect the job graph in the pipeline object.
2. Enable the Dataflow API.

3. Add the following import statement:

   from apache_beam.runners import DataflowRunner
   

4. Pass in your pipeline options.

   # Set up Apache Beam pipeline options.
   options = pipeline_options.PipelineOptions()
   
   # Set the project to the default project in your current Google Cloud
   # environment.
   _, options.view_as(GoogleCloudOptions).project = google.auth.default()
   
   # Set the Google Cloud region to run Dataflow.
   options.view_as(GoogleCloudOptions).region = 'us-central1'
   
   # Choose a Cloud Storage location.
   dataflow_gcs_location = 'gs://<change me>/dataflow'
   
   # Set the staging location. This location is used to stage the
   # Dataflow pipeline and SDK binary.
   options.view_as(GoogleCloudOptions).staging_location = '%s/staging' % dataflow_gcs_location
   
   # Set the temporary location. This location is used to store temporary files
   # or intermediate results before outputting to the sink.
   options.view_as(GoogleCloudOptions).temp_location = '%s/temp' % dataflow_gcs_location
   
   # If and only if you are using Apache Beam SDK built from source code, set
   # the SDK location. This is used by Dataflow to locate the SDK
   # needed to run the pipeline.
   options.view_as(pipeline_options.SetupOptions).sdk_location = (
       '/root/apache-beam-custom/packages/beam/sdks/python/dist/apache-beam-%s0.tar.gz' %
       beam.version.__version__)
   

   You can adjust the parameter values. For example, you can change the region value from us-central1.

5. Run the pipeline with DataflowRunner. This runs your job on the Dataflow service.

   runner = DataflowRunner()
   runner.run_pipeline(p, options=options)
   

   p is a pipeline object from Creating your pipeline.

For an example on how to perform this conversion on an interactive notebook, see the Dataflow Word Count notebook in your notebook instance.

Alternatively, you can export your notebook as an executable script, modify the generated .py file using the previous steps, and then deploy your pipeline to the Dataflow service.

Save your notebook

Notebooks you create are saved locally in your running notebook instance. If you reset or shut down the notebook instance during development, those new notebooks are persisted as long as they are created under the /home/jupyter directory. However, if a notebook instance is deleted, those notebooks are also deleted.

To keep your notebooks for future use, download them locally to your workstation, save them to GitHub, or export them to a different file format.

Save your notebook to additional persistent disks

If you want to keep your work such as notebooks and scripts throughout various notebook instances, you can store them in Persistent Disk.

1. Create or attach a Persistent Disk. Follow the instructions to use ssh to connect to the VM of the notebook instance and issue commands in the opened Cloud Shell.

   Warning: Do not issue commands from terminals inside of the notebook instance.

2. Note the directory where the Persistent Disk is mounted, for example, /mnt/myDisk.

3. Edit the VM details of the notebook instance to add an entry to the Custom metadata: key - container-custom-params; value - -v /mnt/myDisk:/mnt/myDisk.

4. Click Save.

5. To update these changes, reset the notebook instance.

6. When the link becomes active after the reset, click Open JupyterLab. It might take a while for the JupyterLab UI to become available. Once the UI shows up, open a terminal and run the following command: ls -al /mnt The /mnt/myDisk directory should be listed.

Now you can save your work to the /mnt/myDisk directory. Even if the notebook instance is deleted, the Persistent Disk still exists under your project. You can then attach this Persistent Disk to other notebook instances.

Clean up

After you've finished using your Apache Beam notebook instance, clean up the resources you created on Google Cloud by shutting down the notebook instance.

Advanced Features

Interactive FlinkRunner on notebook-managed clusters

To work with production sized data interactively from the notebook, you can use the FlinkRunner with some generic pipeline options to tell the notebook session to manage a long-lasting Dataproc cluster and execute your Beam pipelines distributedly.

Prerequisites

To use this feature:

• Dataproc API needs to be enabled.
• The service account running the notebook instance needs to have admin or editor roles for Dataproc.
• Use a notebook kernel with Beam version >= 2.40.0.

Configuration

The minimum setup:

# Set a Cloud Storage bucket to cache source recording and PCollections.
# By default, the cache is on the notebook instance itself, but that does not
# apply to the distributed execution scenario.
ib.options.cache_root = 'gs://<CHANGE_ME>/flink_on_dataproc'

# Define an InteractiveRunner that uses the FlinkRunner under the hood.
interactive_flink_runner = InteractiveRunner(underlying_runner=FlinkRunner())

options = PipelineOptions()
# Instruct the notebook that Google Cloud is used to run the FlinkRunner.
cloud_options = options.view_as(GoogleCloudOptions)
cloud_options.project = '<YOUR-PROJECT>'

Usage

p = beam.Pipeline(interactive_flink_runner, options=options)
pcoll = p | 'read' >> ReadWords('gs://apache-beam-samples/shakespeare/kinglear.txt')
pcoll2 = ...
# The notebook session automatically starts and manages a cluster to execute
# your pipelines for execution with the FlinkRunner.
ib.show(pcoll)
# This reuses the existing cluster.
ib.collect(pcoll2)

# Describe the cluster running the pipeline.
# You can access the Flink Dashboard from the printed link.
ib.clusters.describe(p)

# Cleans up all long-lasting clusters managed by the notebook session.
ib.clusters.cleanup(force=True)

(Optional) Explicit provision

More options:

# Change this if the pipeline needs to be executed in a different region
# than the default 'us-central1'. For example, to set it to 'us-west1':
cloud_options.region = 'us-west1'

# Explicitly provision the notebook-managed cluster.
worker_options = options.view_as(WorkerOptions)
# Provision 3 workers to run the pipeline.
worker_options.num_workers=3
# Use the default subnetwork.
worker_options.subnetwork='default'
# Choose the machine type for the workers.
worker_options.machine_type='n2-standard-16'

# When working with non-official Beam releases, e.g. Beam built from source
# code, configure the environment to use a compatible released SDK container.
options.view_as(PortableOptions).environment_config = 'apache/beam_python3.7_sdk:2.40.0'

Notebook-Managed Clusters

• By default, Interactive Beam always reuses the most recently used cluster to run a pipeline with the FlinkRunner if no pipeline options are given.
  • To avoid this behavior, e.g. to run another pipeline in the same notebook session with a FlinkRunner not hosted by the notebook, run ib.clusters.set_default_cluster(None).
• When instantiating a new pipeline that uses a project, region, and provisioning configuration that map to an existing Dataproc cluster, Dataflow also reuses the cluster (though it might not be the most recently used cluster).
• However, whenever a provisioning change (e.g. resizing a cluster) is given, a new cluster is created to actuate the desired change. Avoid exhausting cloud resources by cleaning up unnecessary clusters through ib.clusters.cleanup(pipeline) if you intend to resize a cluster.
• When a Flink master_url is specified, if it belongs to a cluster that is managed by the notebook session, Dataflow reuses the managed cluster.
  • If the master_url is unknown to the notebook session, it means that a user-self-hosted FlinkRunner is desired; the notebook won't do anything implicitly.

Beam SQL and beam_sql magic

Beam SQL allows you to query bounded and unbounded PCollections with SQL statements. If you're working in an Apache Beam notebook, you can use the IPython custom magic beam_sql to speed up your pipeline development.

You can check the beam_sql magic usage with the -h or --help option:

You can create a PCollection from constant values:

You can join multiple PCollections:

You can launch a Dataflow job with the -r DataflowRunner or --runner DataflowRunner option:

To learn more, see the example notebook Apache Beam SQL in notebooks.

Accelerate using JIT compiler and GPU

You can use libraries such as numba and GPUs to accelerate your Python code and Apache Beam pipelines. In the Apache Beam notebook instance created with an nvidia-tesla-t4 GPU, you can compile your Python code with numba.cuda.jit to run on the GPU. Optionally, you can compile your Python code into machine code with numba.jit or numba.njit to speed up the execution on CPUs.

A DoFn that processes on GPUs:

class Sampler(beam.DoFn):
    def __init__(self, blocks=80, threads_per_block=64):
        # Uses only 1 cuda grid with below config.
        self.blocks = blocks
        self.threads_per_block = threads_per_block

    def setup(self):
        import numpy as np
        # An array on host as the prototype of arrays on GPU to
        # hold accumulated sub count of points in the circle.
        self.h_acc = np.zeros(
            self.threads_per_block * self.blocks, dtype=np.float32)

    def process(self, element: Tuple[int, int]):
        from numba import cuda
        from numba.cuda.random import create_xoroshiro128p_states
        from numba.cuda.random import xoroshiro128p_uniform_float32

        @cuda.jit
        def gpu_monte_carlo_pi_sampler(rng_states, sub_sample_size, acc):
            """Uses GPU to sample random values and accumulates the sub count
            of values within a circle of radius 1.
            """
            pos = cuda.grid(1)
            if pos < acc.shape[0]:
                sub_acc = 0
                for i in range(sub_sample_size):
                    x = xoroshiro128p_uniform_float32(rng_states, pos)
                    y = xoroshiro128p_uniform_float32(rng_states, pos)
                    if (x * x + y * y) <= 1.0:
                        sub_acc += 1
                acc[pos] = sub_acc

        rng_seed, sample_size = element
        d_acc = cuda.to_device(self.h_acc)
        sample_size_per_thread = sample_size // self.h_acc.shape[0]
        rng_states = create_xoroshiro128p_states(self.h_acc.shape[0], seed=rng_seed)
        gpu_monte_carlo_pi_sampler[self.blocks, self.threads_per_block](
            rng_states, sample_size_per_thread, d_acc)
        yield d_acc.copy_to_host()

Running on a GPU:

More details can be found in the example notebook Use GPUs with Apache Beam.