Genomics API

Uploads, processes, queries, and searches Genomics data in the cloud.

• REST Resource: v2alpha1.pipelines
• REST Resource: v2alpha1.projects.operations
• REST Resource: v1alpha2.operations
• REST Resource: v1alpha2.pipelines
• REST Resource: v1.annotations
• REST Resource: v1.annotationsets
• REST Resource: v1.callsets
• REST Resource: v1.datasets
• REST Resource: v1.operations
• REST Resource: v1.readgroupsets
• REST Resource: v1.readgroupsets.coveragebuckets
• REST Resource: v1.reads
• REST Resource: v1.references
• REST Resource: v1.references.bases
• REST Resource: v1.referencesets
• REST Resource: v1.variants
• REST Resource: v1.variantsets

Service: genomics.googleapis.com

All URIs below are relative to https://genomics.googleapis.com

This service provides the following discovery documents:

• https://genomics.googleapis.com/$discovery/rest?version=v2alpha1
• https://genomics.googleapis.com/$discovery/rest?version=v1
• https://genomics.googleapis.com/$discovery/rest?version=v1alpha2

REST Resource: v2alpha1.pipelines

Methods
run	POST /v2alpha1/pipelines:run Runs a pipeline.

REST Resource: v2alpha1.projects.operations

Methods
cancel	POST /v2alpha1/{name=projects/*/operations/*}:cancel Starts asynchronous cancellation on a long-running operation.
get	GET /v2alpha1/{name=projects/*/operations/*} Gets the latest state of a long-running operation.
list	GET /v2alpha1/{name=projects/*/operations} Lists operations that match the specified filter in the request.

Service: genomics.googleapis.com

All URIs below are relative to https://genomics.googleapis.com

This service provides the following discovery documents:

• https://genomics.googleapis.com/$discovery/rest?version=v2alpha1
• https://genomics.googleapis.com/$discovery/rest?version=v1
• https://genomics.googleapis.com/$discovery/rest?version=v1alpha2

REST Resource: v1alpha2.operations

Methods
cancel	POST /v1alpha2/{name=operations/**}:cancel Starts asynchronous cancellation on a long-running operation.
get	GET /v1alpha2/{name=operations/**} Gets the latest state of a long-running operation.
list	GET /v1alpha2/{name} Lists operations that match the specified filter in the request.

REST Resource: v1alpha2.pipelines

Methods
create (deprecated)	POST /v1alpha2/pipelines Creates a pipeline that can be run later.
delete (deprecated)	DELETE /v1alpha2/pipelines/{pipelineId} Deletes a pipeline based on ID.
get (deprecated)	GET /v1alpha2/pipelines/{pipelineId} Retrieves a pipeline based on ID.
getControllerConfig (deprecated)	GET /v1alpha2/pipelines:getControllerConfig Gets controller configuration information.
list (deprecated)	GET /v1alpha2/pipelines Lists pipelines.
run (deprecated)	POST /v1alpha2/pipelines:run Runs a pipeline.
setOperationStatus (deprecated)	PUT /v1alpha2/pipelines:setOperationStatus Sets status of a given operation.

Service: genomics.googleapis.com

All URIs below are relative to https://genomics.googleapis.com

This service provides the following discovery documents:

• https://genomics.googleapis.com/$discovery/rest?version=v2alpha1
• https://genomics.googleapis.com/$discovery/rest?version=v1
• https://genomics.googleapis.com/$discovery/rest?version=v1alpha2

REST Resource: v1.annotations

Methods
batchCreate (deprecated)	POST /v1/annotations:batchCreate Creates one or more new annotations atomically.
create (deprecated)	POST /v1/annotations Creates a new annotation.
delete (deprecated)	DELETE /v1/annotations/{annotationId} Deletes an annotation.
get (deprecated)	GET /v1/annotations/{annotationId} Gets an annotation.
search (deprecated)	POST /v1/annotations/search Searches for annotations that match the given criteria.
update (deprecated)	PUT /v1/annotations/{annotationId} Updates an annotation.

REST Resource: v1.annotationsets

Methods
create (deprecated)	POST /v1/annotationsets Creates a new annotation set.
delete (deprecated)	DELETE /v1/annotationsets/{annotationSetId} Deletes an annotation set.
get (deprecated)	GET /v1/annotationsets/{annotationSetId} Gets an annotation set.
search (deprecated)	POST /v1/annotationsets/search Searches for annotation sets that match the given criteria.
update (deprecated)	PUT /v1/annotationsets/{annotationSetId} Updates an annotation set.

REST Resource: v1.callsets

Methods
create (deprecated)	POST /v1/callsets Creates a new call set.
delete (deprecated)	DELETE /v1/callsets/{callSetId} Deletes a call set.
get (deprecated)	GET /v1/callsets/{callSetId} Gets a call set by ID.
patch (deprecated)	PATCH /v1/callsets/{callSetId} Updates a call set.
search (deprecated)	POST /v1/callsets/search Gets a list of call sets matching the criteria.

REST Resource: v1.datasets

Methods
create (deprecated)	POST /v1/datasets Creates a new dataset.
delete (deprecated)	DELETE /v1/datasets/{datasetId} Deletes a dataset and all of its contents (all read group sets, reference sets, variant sets, call sets, annotation sets, etc.) This is reversible (up to one week after the deletion) via the datasets.undelete operation.
get (deprecated)	GET /v1/datasets/{datasetId} Gets a dataset by ID.
getIamPolicy (deprecated)	POST /v1/{resource=datasets/*}:getIamPolicy Gets the access control policy for the dataset.
list (deprecated)	GET /v1/datasets Lists datasets within a project.
patch (deprecated)	PATCH /v1/datasets/{datasetId} Updates a dataset.
setIamPolicy (deprecated)	POST /v1/{resource=datasets/*}:setIamPolicy Sets the access control policy on the specified dataset.
testIamPermissions (deprecated)	POST /v1/{resource=datasets/*}:testIamPermissions Returns permissions that a caller has on the specified resource.
undelete (deprecated)	POST /v1/datasets/{datasetId}:undelete Undeletes a dataset by restoring a dataset which was deleted via this API.

REST Resource: v1.operations

Methods
cancel	POST /v1/{name=operations/**}:cancel Starts asynchronous cancellation on a long-running operation.
get	GET /v1/{name=operations/**} Gets the latest state of a long-running operation.
list	GET /v1/{name} Lists operations that match the specified filter in the request.

REST Resource: v1.readgroupsets

Methods
delete (deprecated)	DELETE /v1/readgroupsets/{readGroupSetId} Deletes a read group set.
export (deprecated)	POST /v1/readgroupsets/{readGroupSetId}:export Exports a read group set to a BAM file in Google Cloud Storage.
get (deprecated)	GET /v1/readgroupsets/{readGroupSetId} Gets a read group set by ID.
import (deprecated)	POST /v1/readgroupsets:import Creates read group sets by asynchronously importing the provided information.
patch (deprecated)	PATCH /v1/readgroupsets/{readGroupSetId} Updates a read group set.
search (deprecated)	POST /v1/readgroupsets/search Searches for read group sets matching the criteria.

REST Resource: v1.readgroupsets.coveragebuckets

Methods
list (deprecated)	GET /v1/readgroupsets/{readGroupSetId}/coveragebuckets Lists fixed width coverage buckets for a read group set, each of which correspond to a range of a reference sequence.

REST Resource: v1.reads

Methods
search (deprecated)	POST /v1/reads/search Gets a list of reads for one or more read group sets.
stream (deprecated)	POST /v1/reads:stream Returns a stream of all the reads matching the search request, ordered by reference name, position, and ID.

REST Resource: v1.references

Methods
get (deprecated)	GET /v1/references/{referenceId} Gets a reference.
search (deprecated)	POST /v1/references/search Searches for references which match the given criteria.

REST Resource: v1.references.bases

Methods
list (deprecated)	GET /v1/references/{referenceId}/bases Lists the bases in a reference, optionally restricted to a range.

REST Resource: v1.referencesets

Methods
get (deprecated)	GET /v1/referencesets/{referenceSetId} Gets a reference set.
search (deprecated)	POST /v1/referencesets/search Searches for reference sets which match the given criteria.

REST Resource: v1.variants

Methods
create (deprecated)	POST /v1/variants Creates a new variant.
delete (deprecated)	DELETE /v1/variants/{variantId} Deletes a variant.
get (deprecated)	GET /v1/variants/{variantId} Gets a variant by ID.
import (deprecated)	POST /v1/variants:import Creates variant data by asynchronously importing the provided information.
merge (deprecated)	POST /v1/variants:merge Merges the given variants with existing variants.
patch (deprecated)	PATCH /v1/variants/{variantId} Updates a variant.
search (deprecated)	POST /v1/variants/search Gets a list of variants matching the criteria.
stream (deprecated)	POST /v1/variants:stream Returns a stream of all the variants matching the search request, ordered by reference name, position, and ID.

REST Resource: v1.variantsets

Methods
create (deprecated)	POST /v1/variantsets Creates a new variant set.
delete (deprecated)	DELETE /v1/variantsets/{variantSetId} Deletes a variant set including all variants, call sets, and calls within.
export (deprecated)	POST /v1/variantsets/{variantSetId}:export Exports variant set data to an external destination.
get (deprecated)	GET /v1/variantsets/{variantSetId} Gets a variant set by ID.
patch (deprecated)	PATCH /v1/variantsets/{variantSetId} Updates a variant set using patch semantics.
search (deprecated)	POST /v1/variantsets/search Returns a list of all variant sets matching search criteria.