Package com.google.cloud.lifesciences.v2beta (0.16.0)

A client to Cloud Life Sciences API

The interfaces provided are listed below, along with usage samples.

WorkflowsServiceV2BetaClient

Service Description: A service for running workflows, such as pipelines consisting of Docker containers.

Sample for WorkflowsServiceV2BetaClient:


 // This snippet has been automatically generated and should be regarded as a code template only.
 // It will require modifications to work:
 // - It may require correct/in-range values for request initialization.
 // - It may require specifying regional endpoints when creating the service client as shown in
 // https://cloud.google.com/java/docs/setup#configure_endpoints_for_the_client_library
 try (WorkflowsServiceV2BetaClient workflowsServiceV2BetaClient =
     WorkflowsServiceV2BetaClient.create()) {
   GetLocationRequest request = GetLocationRequest.newBuilder().setName("name3373707").build();
   Location response = workflowsServiceV2BetaClient.getLocation(request);
 }

Classes

Accelerator

Carries information about an accelerator that can be attached to a VM.

Protobuf type google.cloud.lifesciences.v2beta.Accelerator

Accelerator.Builder

Carries information about an accelerator that can be attached to a VM.

Protobuf type google.cloud.lifesciences.v2beta.Accelerator

Action

Specifies a single action that runs a Docker container.

Protobuf type google.cloud.lifesciences.v2beta.Action

Action.Builder

Specifies a single action that runs a Docker container.

Protobuf type google.cloud.lifesciences.v2beta.Action

ContainerKilledEvent

An event generated when a container is forcibly terminated by the worker. Currently, this only occurs when the container outlives the timeout specified by the user.

Protobuf type google.cloud.lifesciences.v2beta.ContainerKilledEvent

ContainerKilledEvent.Builder

An event generated when a container is forcibly terminated by the worker. Currently, this only occurs when the container outlives the timeout specified by the user.

Protobuf type google.cloud.lifesciences.v2beta.ContainerKilledEvent

ContainerStartedEvent

An event generated when a container starts.

Protobuf type google.cloud.lifesciences.v2beta.ContainerStartedEvent

ContainerStartedEvent.Builder

An event generated when a container starts.

Protobuf type google.cloud.lifesciences.v2beta.ContainerStartedEvent

ContainerStoppedEvent

An event generated when a container exits.

Protobuf type google.cloud.lifesciences.v2beta.ContainerStoppedEvent

ContainerStoppedEvent.Builder

An event generated when a container exits.

Protobuf type google.cloud.lifesciences.v2beta.ContainerStoppedEvent

DelayedEvent

An event generated whenever a resource limitation or transient error delays execution of a pipeline that was otherwise ready to run.

Protobuf type google.cloud.lifesciences.v2beta.DelayedEvent

DelayedEvent.Builder

An event generated whenever a resource limitation or transient error delays execution of a pipeline that was otherwise ready to run.

Protobuf type google.cloud.lifesciences.v2beta.DelayedEvent

Carries information about a disk that can be attached to a VM. See https://cloud.google.com/compute/docs/disks/performance for more information about disk type, size, and performance considerations. Specify either Volume or Disk, but not both.

Protobuf type google.cloud.lifesciences.v2beta.Disk

Disk.Builder

Protobuf type google.cloud.lifesciences.v2beta.Disk

Event

Carries information about events that occur during pipeline execution.

Protobuf type google.cloud.lifesciences.v2beta.Event

Event.Builder

Carries information about events that occur during pipeline execution.

Protobuf type google.cloud.lifesciences.v2beta.Event

ExistingDisk

Configuration for an existing disk to be attached to the VM.

Protobuf type google.cloud.lifesciences.v2beta.ExistingDisk

ExistingDisk.Builder

Configuration for an existing disk to be attached to the VM.

Protobuf type google.cloud.lifesciences.v2beta.ExistingDisk

FailedEvent

An event generated when the execution of a pipeline has failed. Note that other events can continue to occur after this event.

Protobuf type google.cloud.lifesciences.v2beta.FailedEvent

FailedEvent.Builder

An event generated when the execution of a pipeline has failed. Note that other events can continue to occur after this event.

Protobuf type google.cloud.lifesciences.v2beta.FailedEvent

Metadata

Carries information about the pipeline execution that is returned in the long running operation's metadata field.

Protobuf type google.cloud.lifesciences.v2beta.Metadata

Metadata.Builder

Carries information about the pipeline execution that is returned in the long running operation's metadata field.

Protobuf type google.cloud.lifesciences.v2beta.Metadata

Mount

Carries information about a particular disk mount inside a container.

Protobuf type google.cloud.lifesciences.v2beta.Mount

Mount.Builder

Carries information about a particular disk mount inside a container.

Protobuf type google.cloud.lifesciences.v2beta.Mount

NFSMount

Configuration for an NFSMount to be attached to the VM.

Protobuf type google.cloud.lifesciences.v2beta.NFSMount

NFSMount.Builder

Configuration for an NFSMount to be attached to the VM.

Protobuf type google.cloud.lifesciences.v2beta.NFSMount

Network

VM networking options.

Protobuf type google.cloud.lifesciences.v2beta.Network

Network.Builder

VM networking options.

Protobuf type google.cloud.lifesciences.v2beta.Network

PersistentDisk

Configuration for a persistent disk to be attached to the VM. See https://cloud.google.com/compute/docs/disks/performance for more information about disk type, size, and performance considerations.

Protobuf type google.cloud.lifesciences.v2beta.PersistentDisk

PersistentDisk.Builder

Configuration for a persistent disk to be attached to the VM. See https://cloud.google.com/compute/docs/disks/performance for more information about disk type, size, and performance considerations.

Protobuf type google.cloud.lifesciences.v2beta.PersistentDisk

Pipeline

Specifies a series of actions to execute, expressed as Docker containers.

Protobuf type google.cloud.lifesciences.v2beta.Pipeline

Pipeline.Builder

Specifies a series of actions to execute, expressed as Docker containers.

Protobuf type google.cloud.lifesciences.v2beta.Pipeline

PullStartedEvent

An event generated when the worker starts pulling an image.

Protobuf type google.cloud.lifesciences.v2beta.PullStartedEvent

PullStartedEvent.Builder

An event generated when the worker starts pulling an image.

Protobuf type google.cloud.lifesciences.v2beta.PullStartedEvent

PullStoppedEvent

An event generated when the worker stops pulling an image.

Protobuf type google.cloud.lifesciences.v2beta.PullStoppedEvent

PullStoppedEvent.Builder

An event generated when the worker stops pulling an image.

Protobuf type google.cloud.lifesciences.v2beta.PullStoppedEvent

Resources

The system resources for the pipeline run. At least one zone or region must be specified or the pipeline run will fail.

Protobuf type google.cloud.lifesciences.v2beta.Resources

Resources.Builder

The system resources for the pipeline run. At least one zone or region must be specified or the pipeline run will fail.

Protobuf type google.cloud.lifesciences.v2beta.Resources

RunPipelineRequest

The arguments to the RunPipeline method. The requesting user must have the iam.serviceAccounts.actAs permission for the Cloud Life Sciences service account or the request will fail.

Protobuf type google.cloud.lifesciences.v2beta.RunPipelineRequest

RunPipelineRequest.Builder

The arguments to the RunPipeline method. The requesting user must have the iam.serviceAccounts.actAs permission for the Cloud Life Sciences service account or the request will fail.

Protobuf type google.cloud.lifesciences.v2beta.RunPipelineRequest

RunPipelineResponse

The response to the RunPipeline method, returned in the operation's result field on success.

Protobuf type google.cloud.lifesciences.v2beta.RunPipelineResponse

RunPipelineResponse.Builder

The response to the RunPipeline method, returned in the operation's result field on success.

Protobuf type google.cloud.lifesciences.v2beta.RunPipelineResponse

Secret

Holds encrypted information that is only decrypted and stored in RAM by the worker VM when running the pipeline.

Protobuf type google.cloud.lifesciences.v2beta.Secret

Secret.Builder

Holds encrypted information that is only decrypted and stored in RAM by the worker VM when running the pipeline.

Protobuf type google.cloud.lifesciences.v2beta.Secret

ServiceAccount

Carries information about a Google Cloud service account.

Protobuf type google.cloud.lifesciences.v2beta.ServiceAccount

ServiceAccount.Builder

Carries information about a Google Cloud service account.

Protobuf type google.cloud.lifesciences.v2beta.ServiceAccount

UnexpectedExitStatusEvent

An event generated when the execution of a container results in a non-zero exit status that was not otherwise ignored. Execution will continue, but only actions that are flagged as ALWAYS_RUN will be executed. Other actions will be skipped.

Protobuf type google.cloud.lifesciences.v2beta.UnexpectedExitStatusEvent

UnexpectedExitStatusEvent.Builder

Protobuf type google.cloud.lifesciences.v2beta.UnexpectedExitStatusEvent

VirtualMachine

Carries information about a Compute Engine VM resource.

Protobuf type google.cloud.lifesciences.v2beta.VirtualMachine

VirtualMachine.Builder

Carries information about a Compute Engine VM resource.

Protobuf type google.cloud.lifesciences.v2beta.VirtualMachine

Volume

Carries information about storage that can be attached to a VM. Specify either Volume or Disk, but not both.

Protobuf type google.cloud.lifesciences.v2beta.Volume

Volume.Builder

Carries information about storage that can be attached to a VM. Specify either Volume or Disk, but not both.

Protobuf type google.cloud.lifesciences.v2beta.Volume

WorkerAssignedEvent

An event generated after a worker VM has been assigned to run the pipeline.

Protobuf type google.cloud.lifesciences.v2beta.WorkerAssignedEvent

WorkerAssignedEvent.Builder

An event generated after a worker VM has been assigned to run the pipeline.

Protobuf type google.cloud.lifesciences.v2beta.WorkerAssignedEvent

WorkerReleasedEvent

An event generated when the worker VM that was assigned to the pipeline has been released (deleted).

Protobuf type google.cloud.lifesciences.v2beta.WorkerReleasedEvent

WorkerReleasedEvent.Builder

An event generated when the worker VM that was assigned to the pipeline has been released (deleted).

Protobuf type google.cloud.lifesciences.v2beta.WorkerReleasedEvent

WorkflowsProto

WorkflowsServiceV2BetaClient

Service Description: A service for running workflows, such as pipelines consisting of Docker containers.

This class provides the ability to make remote calls to the backing service through method calls that map to API methods. Sample code to get started:


 // This snippet has been automatically generated and should be regarded as a code template only.
 // It will require modifications to work:
 // - It may require correct/in-range values for request initialization.
 // - It may require specifying regional endpoints when creating the service client as shown in
 // https://cloud.google.com/java/docs/setup#configure_endpoints_for_the_client_library
 try (WorkflowsServiceV2BetaClient workflowsServiceV2BetaClient =
     WorkflowsServiceV2BetaClient.create()) {
   GetLocationRequest request = GetLocationRequest.newBuilder().setName("name3373707").build();
   Location response = workflowsServiceV2BetaClient.getLocation(request);
 }

Note: close() needs to be called on the WorkflowsServiceV2BetaClient object to clean up resources such as threads. In the example above, try-with-resources is used, which automatically calls close().

The surface of this class includes several types of Java methods for each of the API's methods:

A "flattened" method. With this type of method, the fields of the request type have been converted into function parameters. It may be the case that not all fields are available as parameters, and not every API method will have a flattened method entry point.
A "request object" method. This type of method only takes one parameter, a request object, which must be constructed before the call. Not every API method will have a request object method.
A "callable" method. This type of method takes no parameters and returns an immutable API callable object, which can be used to initiate calls to the service.

See the individual methods for example code.

Many parameters require resource names to be formatted in a particular way. To assist with these names, this class includes a format method for each type of name, and additionally a parse method to extract the individual identifiers contained within names that are returned.

This class can be customized by passing in a custom instance of WorkflowsServiceV2BetaSettings to create(). For example:

To customize credentials:


 // This snippet has been automatically generated and should be regarded as a code template only.
 // It will require modifications to work:
 // - It may require correct/in-range values for request initialization.
 // - It may require specifying regional endpoints when creating the service client as shown in
 // https://cloud.google.com/java/docs/setup#configure_endpoints_for_the_client_library
 WorkflowsServiceV2BetaSettings workflowsServiceV2BetaSettings =
     WorkflowsServiceV2BetaSettings.newBuilder()
         .setCredentialsProvider(FixedCredentialsProvider.create(myCredentials))
         .build();
 WorkflowsServiceV2BetaClient workflowsServiceV2BetaClient =
     WorkflowsServiceV2BetaClient.create(workflowsServiceV2BetaSettings);

To customize the endpoint:


 // This snippet has been automatically generated and should be regarded as a code template only.
 // It will require modifications to work:
 // - It may require correct/in-range values for request initialization.
 // - It may require specifying regional endpoints when creating the service client as shown in
 // https://cloud.google.com/java/docs/setup#configure_endpoints_for_the_client_library
 WorkflowsServiceV2BetaSettings workflowsServiceV2BetaSettings =
     WorkflowsServiceV2BetaSettings.newBuilder().setEndpoint(myEndpoint).build();
 WorkflowsServiceV2BetaClient workflowsServiceV2BetaClient =
     WorkflowsServiceV2BetaClient.create(workflowsServiceV2BetaSettings);

To use REST (HTTP1.1/JSON) transport (instead of gRPC) for sending and receiving requests over the wire:


 // This snippet has been automatically generated and should be regarded as a code template only.
 // It will require modifications to work:
 // - It may require correct/in-range values for request initialization.
 // - It may require specifying regional endpoints when creating the service client as shown in
 // https://cloud.google.com/java/docs/setup#configure_endpoints_for_the_client_library
 WorkflowsServiceV2BetaSettings workflowsServiceV2BetaSettings =
     WorkflowsServiceV2BetaSettings.newHttpJsonBuilder().build();
 WorkflowsServiceV2BetaClient workflowsServiceV2BetaClient =
     WorkflowsServiceV2BetaClient.create(workflowsServiceV2BetaSettings);

Please refer to the GitHub repository's samples for more quickstart code snippets.

The default service address (lifesciences.googleapis.com) and default port (443) are used.
Credentials are acquired automatically through Application Default Credentials.
Retries are configured for idempotent methods but not for non-idempotent methods.

The builder of this class is recursive, so contained classes are themselves builders. When build() is called, the tree of builders is called to create the complete settings object.

For example, to set the total timeout of getLocation to 30 seconds:


 // This snippet has been automatically generated and should be regarded as a code template only.
 // It will require modifications to work:
 // - It may require correct/in-range values for request initialization.
 // - It may require specifying regional endpoints when creating the service client as shown in
 // https://cloud.google.com/java/docs/setup#configure_endpoints_for_the_client_library
 WorkflowsServiceV2BetaSettings.Builder workflowsServiceV2BetaSettingsBuilder =
     WorkflowsServiceV2BetaSettings.newBuilder();
 workflowsServiceV2BetaSettingsBuilder
     .getLocationSettings()
     .setRetrySettings(
         workflowsServiceV2BetaSettingsBuilder
             .getLocationSettings()
             .getRetrySettings()
             .toBuilder()
             .setTotalTimeout(Duration.ofSeconds(30))
             .build());
 WorkflowsServiceV2BetaSettings workflowsServiceV2BetaSettings =
     workflowsServiceV2BetaSettingsBuilder.build();

Package com.google.cloud.lifesciences.v2beta (0.16.0)

WorkflowsServiceV2BetaClient

Classes

Interfaces

Enums