import com.google.api.client.http.HttpRequestInitializer;
import com.google.api.client.http.javanet.NetHttpTransport;
import com.google.api.client.json.JsonFactory;
import com.google.api.client.json.jackson2.JacksonFactory;
import com.google.api.services.healthcare.v1.CloudHealthcare;
import com.google.api.services.healthcare.v1.CloudHealthcareScopes;
import com.google.auth.http.HttpCredentialsAdapter;
import com.google.auth.oauth2.GoogleCredentials;
import java.io.IOException;
import java.net.URISyntaxException;
import java.util.Collections;
import org.apache.http.HttpEntity;
import org.apache.http.HttpResponse;
import org.apache.http.HttpStatus;
import org.apache.http.client.HttpClient;
import org.apache.http.client.methods.HttpUriRequest;
import org.apache.http.client.methods.RequestBuilder;
import org.apache.http.client.utils.URIBuilder;
import org.apache.http.entity.StringEntity;
import org.apache.http.impl.client.HttpClients;
public class FhirResourceSearchGet {
private static final String FHIR_NAME =
"projects/%s/locations/%s/datasets/%s/fhirStores/%s/fhir/%s";
// The endpoint URL for the Healthcare API. Required for HttpClient.
private static final String API_ENDPOINT = "https://healthcare.googleapis.com";
private static final JsonFactory JSON_FACTORY = new JacksonFactory();
private static final NetHttpTransport HTTP_TRANSPORT = new NetHttpTransport();
public static void fhirResourceSearchGet(String resourceName)
throws IOException, URISyntaxException {
// String resourceName =
// String.format(
// FHIR_NAME, "project-id", "region-id", "dataset-id", "fhir-store-id");
// String resourceType = "Patient";
// Instantiate the client, which will be used to interact with the service.
HttpClient httpClient = HttpClients.createDefault();
String uri = String.format("%s/v1/%s", API_ENDPOINT, resourceName);
URIBuilder uriBuilder = new URIBuilder(uri).setParameter("access_token", getAccessToken());
// To set additional parameters for search filtering, add them to the URIBuilder. For
// example, to search for a Patient with the family name "Smith", specify the following:
// uriBuilder.setParameter("family:exact", "Smith");
HttpUriRequest request =
RequestBuilder.get()
.setUri(uriBuilder.build())
.build();
// Execute the request and process the results.
HttpResponse response = httpClient.execute(request);
HttpEntity responseEntity = response.getEntity();
if (response.getStatusLine().getStatusCode() != HttpStatus.SC_OK) {
System.err.print(
String.format(
"Exception searching GET FHIR resources: %s\n", response.getStatusLine().toString()));
responseEntity.writeTo(System.err);
throw new RuntimeException();
}
System.out.println("FHIR resource GET search results: ");
responseEntity.writeTo(System.out);
}
private static CloudHealthcare createClient() throws IOException {
// Use Application Default Credentials (ADC) to authenticate the requests
// For more information see https://cloud.google.com/docs/authentication/production
GoogleCredentials credential =
GoogleCredentials.getApplicationDefault()
.createScoped(Collections.singleton(CloudHealthcareScopes.CLOUD_PLATFORM));
// Create a HttpRequestInitializer, which will provide a baseline configuration to all requests.
HttpRequestInitializer requestInitializer =
request -> {
new HttpCredentialsAdapter(credential).initialize(request);
request.setConnectTimeout(60000); // 1 minute connect timeout
request.setReadTimeout(60000); // 1 minute read timeout
};
// Build the client for interacting with the service.
return new CloudHealthcare.Builder(HTTP_TRANSPORT, JSON_FACTORY, requestInitializer)
.setApplicationName("your-application-name")
.build();
}
private static String getAccessToken() throws IOException {
GoogleCredentials credential =
GoogleCredentials.getApplicationDefault()
.createScoped(Collections.singleton(CloudHealthcareScopes.CLOUD_PLATFORM));
return credential.refreshAccessToken().getTokenValue();
}
}
def search_resources_get(
project_id,
location,
dataset_id,
fhir_store_id,
resource_type,
):
"""
Uses the searchResources GET method to search for resources in the given FHIR store.
See https://github.com/GoogleCloudPlatform/python-docs-samples/tree/main/healthcare/api-client/v1/fhir
before running the sample."""
# Imports Python's built-in "os" module
import os
# Imports the google.auth.transport.requests transport
from google.auth.transport import requests
# Imports a module to allow authentication using a service account
from google.oauth2 import service_account
# Gets credentials from the environment.
credentials = service_account.Credentials.from_service_account_file(
os.environ["GOOGLE_APPLICATION_CREDENTIALS"]
)
scoped_credentials = credentials.with_scopes(
["https://www.googleapis.com/auth/cloud-platform"]
)
# Creates a requests Session object with the credentials.
session = requests.AuthorizedSession(scoped_credentials)
# URL to the Cloud Healthcare API endpoint and version
base_url = "https://healthcare.googleapis.com/v1"
# TODO(developer): Uncomment these lines and replace with your values.
# project_id = 'my-project' # replace with your GCP project ID
# location = 'us-central1' # replace with the parent dataset's location
# dataset_id = 'my-dataset' # replace with the parent dataset's ID
# fhir_store_id = 'my-fhir-store' # replace with the FHIR store ID
# resource_type = 'Patient' # replace with the FHIR resource type
url = "{}/projects/{}/locations/{}".format(base_url, project_id, location)
resource_path = "{}/datasets/{}/fhirStores/{}/fhir/{}".format(
url, dataset_id, fhir_store_id, resource_type
)
response = session.get(resource_path)
response.raise_for_status()
resources = response.json()
print(
"Using GET request, found a total of {} {} resources:".format(
resources["total"], resource_type
)
)
print(json.dumps(resources, indent=2))
return resources
