Tutorials

Analyzing variants

• Advanced guide to analyzing variants using BigQuery

  Learn how to use BigQuery to analyze variants and run queries to count variant calls, samples, variants per chromosome, and more.

Running pipelines

• Running GATK Best Practices

  Run the GATK Best Practices pipeline from The Broad Institute of MIT and Harvard on one or more pipelines.

• Running Nextflow

  Use Nextflow to run a proof of concept RNA-Seq pipeline.

• Running Sentieon DNAseq

  Run Sentieon DNAseq as a Google Cloud pipeline.

• Running dsub

  Use dsub to submit and run batch jobs in the cloud.

Running DeepVariant

• Running DeepVariant

  Use DeepVariant, a genomics variant caller that uses deep neural networks, to call genetic variants in germline genomes.

Deploying a Slurm cluster on Compute Engine

• Deploying a Slurm cluster on Compute Engine

  Learn how to deploy a Slurm cluster on Compute Engine for managing resources in high performance computing centers.

GitHub repositories

• Cloud Life Sciences tools

  Explore tools you can use with genomics data on Google Cloud.