UCSC annotations

This dataset contains UCSC Sequence and Annotation Data that was loaded into Cloud Life Sciences for use in sample annotation pipelines. The dataset reflects the state of the ClinVar data as noted in About the dataset.

Dataset access

Cloud Storage folders

The following files are available in the genomics-public-data Cloud Storage bucket:

• gs://genomics-public-data/ucsc/

About the dataset

Dataset source:

• UCSC GRCh38 (Downloaded 12/29/2014 14:00 PST):

  • http://hgdownload.cse.ucsc.edu/goldenPath/hg38/database/refFlat.txt.gz
  • http://hgdownload.cse.ucsc.edu/goldenPath/hg38/database/refGene.txt.gz
  • http://hgdownload.cse.ucsc.edu/goldenPath/hg38/database/knownGene.txt.gz

• UCSC hg19 (Downloaded 3/15/2015 17:00 PST):

  • http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/refFlat.txt.gz
  • http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/refGene.txt.gz
  • http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/knownGene.txt.gz

Use: This dataset is publicly available for anyone to use under the terms provided by the dataset source (https://cse.ucsc.edu/) and is provided "AS IS" without any warranty, express or implied, from Google. Google disclaims all liability for any damages, direct or indirect, resulting from the use of the dataset.